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MVV STC intasome in complex with LEDGF
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7U32 experimental model PDB 3HPH
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.265 f_angle_d 0.401 f_chiral_restr 0.038 f_plane_restr 0.003 f_bond_d 0.002
Sample MVV STC intasome in complex with LEDGF
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Embedding Material vitreous ice Embedding Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 60999 Reported Resolution (Å) 2.8 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7U32, 3HPH) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40.8
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 3300 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Topaz MODEL FITTING UCSF Chimera MODEL REFINEMENT PHENIX 1.21.2_5419 INITIAL EULER ASSIGNMENT RELION 4.0.0 FINAL EULER ASSIGNMENT cryoSPARC 4.5.3 CLASSIFICATION cryoSPARC 4.5.3 RECONSTRUCTION cryoSPARC 4.5.3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 60999