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Crystal structure of Aurora-A bound to DBL3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.09M Halides, 0.12M Ethyleneglycol, 0.1M Buffer system 1, 37.5% Precipitant mix 4
Crystal Properties Matthews coefficient Solvent content 2.66 53.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.27 α = 90 b = 91.32 β = 90 c = 111.19 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2025-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 47.49 100 1 14.5 13.3 25854
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.11 0.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.07 47.49 25772 1317 99.88 0.229 0.2271 0.228 0.2669 0.2666 48.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.96 -6.3 1.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.463 r_dihedral_angle_3_deg 13.273 r_dihedral_angle_1_deg 6.307 r_lrange_it 4.072 r_lrange_other 4.061 r_scangle_it 2.406 r_scangle_other 2.405 r_mcangle_other 2.073 r_mcangle_it 2.071 r_scbond_it 1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.463 r_dihedral_angle_3_deg 13.273 r_dihedral_angle_1_deg 6.307 r_lrange_it 4.072 r_lrange_other 4.061 r_scangle_it 2.406 r_scangle_other 2.405 r_mcangle_other 2.073 r_mcangle_it 2.071 r_scbond_it 1.41 r_scbond_other 1.406 r_mcbond_it 1.274 r_mcbond_other 1.273 r_angle_refined_deg 0.888 r_angle_other_deg 0.341 r_symmetry_nbd_refined 0.244 r_nbd_refined 0.195 r_nbd_other 0.181 r_symmetry_nbd_other 0.171 r_nbtor_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.128 r_xyhbond_nbd_refined 0.112 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.04 r_dihedral_angle_other_2_deg 0.023 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2664 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement xia2 data reduction DIALS data scaling MOLREP phasing PDB-REDO refinement