☰ Navigation Tabs
Crystal structure of Aurora-A bound to DBL1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 2.4M di-Sodium malonate pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.68 54.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.769 α = 90 b = 86.033 β = 90 c = 94.182 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2024-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 63.52 78.3 1 20.7 9.3 13349
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.52 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.362 63.52 13349 669 77.719 0.204 0.2011 0.2026 0.2498 0.2582 20.838
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.338 0.02 -0.358
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.162 r_dihedral_angle_6_deg 13.098 r_lrange_other 8.284 r_lrange_it 8.283 r_dihedral_angle_1_deg 8.263 r_scangle_it 5.873 r_scangle_other 5.871 r_mcangle_other 4.251 r_mcangle_it 4.25 r_scbond_it 3.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.162 r_dihedral_angle_6_deg 13.098 r_lrange_other 8.284 r_lrange_it 8.283 r_dihedral_angle_1_deg 8.263 r_scangle_it 5.873 r_scangle_other 5.871 r_mcangle_other 4.251 r_mcangle_it 4.25 r_scbond_it 3.674 r_scbond_other 3.674 r_mcbond_other 2.68 r_mcbond_it 2.679 r_angle_refined_deg 0.916 r_dihedral_angle_other_2_deg 0.771 r_angle_other_deg 0.344 r_nbd_refined 0.195 r_symmetry_nbd_other 0.17 r_nbtor_refined 0.169 r_nbd_other 0.162 r_symmetry_nbd_refined 0.157 r_symmetry_xyhbond_nbd_refined 0.136 r_xyhbond_nbd_refined 0.128 r_metal_ion_refined 0.121 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.042 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2577 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement xia2 data reduction DIALS data scaling MOLREP phasing REFMAC refinement PDB-REDO refinement