☰ Navigation Tabs
Structure of Mycobacterium tuberculosis InhA in complex with pyridomycin derivative KV35a (compound 12)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8OTL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 298 0.1 M NaCl
0.1 M Bicine
30 % PEGMME 550
Crystal Properties Matthews coefficient Solvent content 2.22 44.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.8 α = 90 b = 82.35 β = 95.67 c = 187.76 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 6M 2024-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.699 63.392 96.2 0.0752 0.0899 0.0488 0.996 9.65 3.2 160107
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.699 1.728 90.5 0.5725 0.6849 0.3715 0.643 2.17 3.06 7452
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.699 63.39 160107 7996 96.2 0.1948 0.1937 0.19 0.2161 0.2112 RANDOM 29.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9768 0.5268 1.3102 -2.287
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 14.97 t_omega_torsion 3.28 t_angle_deg 0.87 t_bond_d 0.007 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11446 Nucleic Acid Atoms Solvent Atoms 1114 Heterogen Atoms 200
Software Software Software Name Purpose autoPROC data processing XSCALE data scaling TRUNCATE data processing BUSTER refinement PHASER phasing Coot model building XDS data reduction