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Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 14.406 r_lrange_other 14.406 r_dihedral_angle_6_deg 13.519 r_dihedral_angle_3_deg 12.617 r_scangle_it 10.072 r_scangle_other 10.072 r_mcangle_it 8.111 r_mcangle_other 8.11 r_dihedral_angle_2_deg 7.325 r_dihedral_angle_1_deg 6.947
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 14.406 r_lrange_other 14.406 r_dihedral_angle_6_deg 13.519 r_dihedral_angle_3_deg 12.617 r_scangle_it 10.072 r_scangle_other 10.072 r_mcangle_it 8.111 r_mcangle_other 8.11 r_dihedral_angle_2_deg 7.325 r_dihedral_angle_1_deg 6.947 r_scbond_it 6.428 r_scbond_other 6.427 r_mcbond_it 5.524 r_mcbond_other 5.524 r_angle_refined_deg 1.119 r_angle_other_deg 0.37 r_dihedral_angle_other_2_deg 0.353 r_nbtor_refined 0.229 r_symmetry_nbd_other 0.195 r_nbd_refined 0.158 r_xyhbond_nbd_refined 0.14 r_symmetry_nbtor_other 0.079 r_symmetry_xyhbond_nbd_other 0.056 r_chiral_restr 0.049 r_gen_planes_refined 0.012 r_bond_refined_d 0.007 r_gen_planes_other 0.001 r_bond_other_d
Sample Manikomycin bound 50S ribosomal subunit
Specimen Preparation Sample Aggregation State CELL Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 251301 Reported Resolution (Å) 2.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOCONTINUUM (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 1000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 5.0.0 MODEL REFINEMENT REFMAC 5.8.0425 RECONSTRUCTION RELION 5.0.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 483608