☰ Navigation Tabs
PLK1 SURFACE ENTROPY REDUCTION (SER) MUTANT IN COMPLEX WITH INHIBITOR GSK461364
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 sodium acetate, ammonium sulphate, MES
Crystal Properties Matthews coefficient Solvent content 2.61 52.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.772 α = 90 b = 104.174 β = 115.309 c = 71.286 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 42.43 88.9 0.07 14.9 4.1 84640 45.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.68 0.23 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.602 42.428 20518 1031 88.592 0.187 0.185 0.1878 0.2178 0.2149 68.082
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.871 2.433 -2.466 -0.488
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.981 r_dihedral_angle_3_deg 13.358 r_dihedral_angle_4_deg 12.448 r_lrange_it 7.03 r_lrange_other 7.029 r_dihedral_angle_1_deg 5.513 r_scangle_it 4.821 r_scangle_other 4.82 r_mcangle_it 3.76 r_mcangle_other 3.759
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.981 r_dihedral_angle_3_deg 13.358 r_dihedral_angle_4_deg 12.448 r_lrange_it 7.03 r_lrange_other 7.029 r_dihedral_angle_1_deg 5.513 r_scangle_it 4.821 r_scangle_other 4.82 r_mcangle_it 3.76 r_mcangle_other 3.759 r_scbond_it 2.934 r_scbond_other 2.933 r_mcbond_it 2.311 r_mcbond_other 2.31 r_angle_refined_deg 1.256 r_angle_other_deg 1.03 r_nbd_other 0.181 r_nbd_refined 0.17 r_symmetry_nbd_other 0.159 r_nbtor_refined 0.151 r_symmetry_nbd_refined 0.143 r_symmetry_xyhbond_nbd_refined 0.121 r_xyhbond_nbd_refined 0.099 r_symmetry_nbtor_other 0.069 r_ncsr_local_group_1 0.064 r_chiral_restr 0.042 r_chiral_restr_other 0.032 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4735 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 147
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing