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PLK1 SURFACE ENTROPY REDUCTION (SER) MUTANT IN COMPLEX WITH THIAZOLIDINONE INHIBITOR COMPOUND 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 sodium acetate, ammonium sulphate, MES
Crystal Properties Matthews coefficient Solvent content 2.6 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.048 α = 90 b = 103.921 β = 115.435 c = 70.799 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9537 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 36.9 87.7 0.08 14.5 3.5 32885 32.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 52.5 0.42 2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.2 36.9 31239 1641 87.266 0.18 0.1779 0.1819 0.2158 0.2186 Random selection 61.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.245 1.24 -0.692 0.521
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.377 r_dihedral_angle_4_deg 15.169 r_dihedral_angle_3_deg 14.407 r_lrange_other 8.506 r_lrange_it 8.489 r_scangle_it 6.108 r_scangle_other 6.107 r_dihedral_angle_1_deg 5.98 r_mcangle_it 4.583 r_mcangle_other 4.583
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.377 r_dihedral_angle_4_deg 15.169 r_dihedral_angle_3_deg 14.407 r_lrange_other 8.506 r_lrange_it 8.489 r_scangle_it 6.108 r_scangle_other 6.107 r_dihedral_angle_1_deg 5.98 r_mcangle_it 4.583 r_mcangle_other 4.583 r_scbond_it 3.886 r_scbond_other 3.885 r_mcbond_it 2.855 r_mcbond_other 2.851 r_angle_refined_deg 1.323 r_angle_other_deg 1.122 r_nbd_other 0.201 r_nbd_refined 0.188 r_symmetry_xyhbond_nbd_refined 0.186 r_symmetry_nbd_other 0.17 r_nbtor_refined 0.155 r_xyhbond_nbd_refined 0.146 r_symmetry_nbd_refined 0.12 r_ncsr_local_group_1 0.085 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.055 r_symmetry_xyhbond_nbd_other 0.023 r_chiral_restr_other 0.022 r_bond_refined_d 0.005 r_xyhbond_nbd_other 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4735 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 133
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing