☰ Navigation Tabs
JetABC DNA loaded state monomer (closed)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB PDB_00008AS8 experimental model PDB PDB_00008BFN experimental model PDB PDB_00008Q72 in silico model Other
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.754 f_angle_d 0.575 f_chiral_restr 0.037 f_bond_d 0.004 f_plane_restr 0.004
Sample Middle-crosslinked JetABC loading on plasmid DNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 93630 Reported Resolution (Å) 3.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (8as8, 8bfn, 8q72) Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version RECONSTRUCTION cryoSPARC V4.6 MODEL REFINEMENT PHENIX 1.21.2_5419:
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION