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Crystal structure of the CtaG_H128A variant from Ruminiclostridium cellulolyticum in complex with PHBA (P2(1)-medium)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9QUZ Crystal structure of CtaG from Ruminiclostridium cellulolyticum (P2(1)-small)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2 M Pottasiumphosphate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.1 41.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.92 α = 90 b = 59.8 β = 95.75 c = 85.07 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 97 0.048 12.6 3.1 79245
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 98.9 0.623 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 30 75273 3962 96.95 0.18638 0.18481 0.1911 0.21633 0.2219 RANDOM 26.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.89 -0.39 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.588 r_dihedral_angle_4_deg 18.395 r_dihedral_angle_3_deg 13.405 r_dihedral_angle_1_deg 6.65 r_long_range_B_refined 4.58 r_long_range_B_other 4.578 r_scangle_other 4.568 r_scbond_it 3.815 r_scbond_other 3.794 r_mcangle_it 3.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.588 r_dihedral_angle_4_deg 18.395 r_dihedral_angle_3_deg 13.405 r_dihedral_angle_1_deg 6.65 r_long_range_B_refined 4.58 r_long_range_B_other 4.578 r_scangle_other 4.568 r_scbond_it 3.815 r_scbond_other 3.794 r_mcangle_it 3.582 r_mcangle_other 3.582 r_mcbond_it 2.933 r_mcbond_other 2.933 r_rigid_bond_restr 1.776 r_angle_other_deg 1.371 r_angle_refined_deg 1.349 r_chiral_restr 0.07 r_gen_planes_refined 0.008 r_bond_refined_d 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5126 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing