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Crystal structure of the CtaG_C11A variant from Ruminiclostridium cellulolyticum (P2(1)2(1)2(1)-small)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9QUZ Crystal structure of CtaG from Ruminiclostridium cellulolyticum (P2(1)-small)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2 M Sodiumphosphate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.18 43.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.77 α = 90 b = 63.62 β = 90 c = 83.81 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 96.1 0.053 13.8 5.3 50719
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 95.9 0.534 2.7 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 30 48146 2534 96.12 0.18585 0.18466 0.1908 0.20598 0.2167 RANDOM 26.185
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 -0.95 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.896 r_dihedral_angle_4_deg 16.917 r_dihedral_angle_3_deg 12.544 r_dihedral_angle_1_deg 6.195 r_long_range_B_refined 2.919 r_long_range_B_other 2.843 r_scangle_other 1.99 r_mcangle_it 1.832 r_mcangle_other 1.832 r_scbond_it 1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.896 r_dihedral_angle_4_deg 16.917 r_dihedral_angle_3_deg 12.544 r_dihedral_angle_1_deg 6.195 r_long_range_B_refined 2.919 r_long_range_B_other 2.843 r_scangle_other 1.99 r_mcangle_it 1.832 r_mcangle_other 1.832 r_scbond_it 1.51 r_scbond_other 1.509 r_mcbond_it 1.302 r_mcbond_other 1.302 r_angle_other_deg 1.198 r_angle_refined_deg 1.122 r_rigid_bond_restr 0.536 r_chiral_restr 0.047 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2602 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing