☰ Navigation Tabs
Mouse RPS15 P131 Mutant Ribosome POST translocation state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LS1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 22.7099 f_angle_d 0.6214 f_chiral_restr 0.0383 f_plane_restr 0.0052 f_bond_d 0.0044
Sample Elongating P131S Mutant Ribosome in POST translocation state
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 157881 Reported Resolution (Å) 3.09 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (7LS1) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details Initial fitting was done using PDB ID 7LS1 in Chimera. Refmac and Phenix were used for Refine
Data Acquisition Detector Type GATAN K2 QUANTUM (4k x 4k) Electron Dose (electrons/Å**2) 45
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 800 Maximum Defocus (nm) 2900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 100000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 3.1 IMAGE ACQUISITION EPU CTF CORRECTION Gctf 1.1.14 MODEL FITTING UCSF Chimera 1.17 MODEL FITTING UCSF ChimeraX 1.9 MODEL FITTING Coot 0.9.8.93 MODEL REFINEMENT PHENIX 1.21.2_5419 INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 691132