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Human angiotensin-1 converting enzyme C-domain in complex with perindoprilat
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7Z70
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 289.15 0.1 M MIB pH 4, 5% glycerol, 15% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.42 49.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.484 α = 90 b = 85.119 β = 90 c = 133.829 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.953731 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 133.83 100 0.066 0.997 8.3 13.2 51757
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 0.792 0.45
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 71.926 51671 2545 99.975 0.171 0.1686 0.1798 0.2221 0.2296 31.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.663 -0.542 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.609 r_dihedral_angle_3_deg 15.236 r_lrange_it 8.452 r_lrange_other 8.452 r_scangle_it 7.501 r_scangle_other 7.5 r_dihedral_angle_2_deg 7.481 r_dihedral_angle_1_deg 6.261 r_scbond_it 5.302 r_scbond_other 5.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.609 r_dihedral_angle_3_deg 15.236 r_lrange_it 8.452 r_lrange_other 8.452 r_scangle_it 7.501 r_scangle_other 7.5 r_dihedral_angle_2_deg 7.481 r_dihedral_angle_1_deg 6.261 r_scbond_it 5.302 r_scbond_other 5.301 r_mcangle_it 4.278 r_mcangle_other 4.277 r_mcbond_it 3.419 r_mcbond_other 3.419 r_angle_refined_deg 2.332 r_angle_other_deg 0.751 r_symmetry_nbd_refined 0.27 r_nbd_refined 0.244 r_symmetry_xyhbond_nbd_refined 0.239 r_nbd_other 0.217 r_symmetry_nbd_other 0.211 r_nbtor_refined 0.195 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.114 r_symmetry_nbtor_other 0.088 r_symmetry_xyhbond_nbd_other 0.071 r_gen_planes_other 0.03 r_bond_refined_d 0.014 r_gen_planes_refined 0.014 r_bond_other_d r_chiral_restr_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4689 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 133
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing