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Human angiotensin-1 converting enzyme C-domain in complex with ramiprilat
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7Z70
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 289.15 0.1 M MIB, 5% glycerol, 15% PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.37 48.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.742 α = 90 b = 85.685 β = 90 c = 134.509 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.953731 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 134.51 100 0.108 0.117 0.045 0.999 11.5 13.1 105702
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.53 100 2.037 2.206 0.842 0.516 1.1 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5 72.372 105606 5370 99.996 0.167 0.1654 0.1734 0.1976 0.2052 24.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.019 0.187 -0.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.895 r_dihedral_angle_3_deg 13.083 r_dihedral_angle_2_deg 8.062 r_lrange_it 6.974 r_lrange_other 6.899 r_scangle_it 6.117 r_scangle_other 6.116 r_dihedral_angle_1_deg 5.947 r_scbond_it 4.205 r_scbond_other 4.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.895 r_dihedral_angle_3_deg 13.083 r_dihedral_angle_2_deg 8.062 r_lrange_it 6.974 r_lrange_other 6.899 r_scangle_it 6.117 r_scangle_other 6.116 r_dihedral_angle_1_deg 5.947 r_scbond_it 4.205 r_scbond_other 4.204 r_mcangle_other 3.222 r_mcangle_it 3.221 r_mcbond_it 2.488 r_mcbond_other 2.487 r_angle_refined_deg 2.208 r_angle_other_deg 0.762 r_symmetry_nbd_refined 0.248 r_nbd_refined 0.238 r_nbd_other 0.219 r_symmetry_xyhbond_nbd_refined 0.196 r_nbtor_refined 0.193 r_xyhbond_nbd_refined 0.187 r_symmetry_nbd_other 0.181 r_chiral_restr 0.116 r_symmetry_nbtor_other 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4690 Nucleic Acid Atoms Solvent Atoms 577 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing