9QAL | pdb_00009qal

Solution NMR structure of Arkadia 2 RING domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC aliphatic	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
20	2D 1H-13C HSQC aromatic	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
2	2D 1H-15N HSQC	0.7 mM [U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
21	2D 1H-15N Trosy HSQC	0.7 mM [U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
3	2D 1H-1H NOESY	0.7 mM ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
4	3D 1H-13C NOESY aliphatic	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
5	3D 1H-13C NOESY aromatic	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
6	3D 1H-15N NOESY	0.7 mM [U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
19	3D HCCH-TOCSY	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
18	3D HNCA	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
17	3D HN(CO)CA	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
16	3D HNCO	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
15	3D HN(CA)CO	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
14	3D CBCA(CO)NH	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
13	3D HNCACB	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
12	3D HBHA(CO)NH	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
11	3D HNHA	0.7 mM [U-99% 13C; U-99% 15N] ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700
10	1D 1H	0.7 mM ARKADIA 2 E3 Ub ligase, RING Domain, 50 mM potassium phosphate, 2 mM DSS	90% H2O/10% D2O	50 mM	7	1 atm	298	Bruker AVANCE III HD 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE III HD	700

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	31
Conformers Submitted Total Number	31
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CARA	1.8.4	Keller and Wuthrich
2	peak picking	XEASY		Bartels et al.
3	structure calculation	DYANA		Guntert, Braun and Wuthrich
4	refinement	Amber	5.0	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman