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HSV-2 prefusion glycoprotein B bound by Nb1_gbHSV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other
Sample Herpes Simplex Virus 2 Glycoprotein B in complex with Nb1_gbHSV Sample Components Glycoprotein B Nb1_gbHSV
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 158509 Reported Resolution (Å) 2.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C3
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value 44.04 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 43.84
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Warp 1.09 IMAGE ACQUISITION SerialEM 4.1.0beta CTF CORRECTION cryoSPARC 4.2.0 MODEL FITTING ISOLDE 1.8 INITIAL EULER ASSIGNMENT cryoSPARC 4.2.0 FINAL EULER ASSIGNMENT cryoSPARC 4.2.0 RECONSTRUCTION cryoSPARC 4.2.0 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 3901343