☰ Navigation Tabs
Structure of holo vanadium-dependent haloperoxidase from Enhygromyxa salina bound to vanadate, and bromide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.7467 f_angle_d 0.5699 f_chiral_restr 0.0425 f_plane_restr 0.0059 f_bond_d 0.0033
Sample vanadium-dependent haloperoxidase from Enhygromyxa salina bound to vanadate, and bromide
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details 1.5 sec blotting time
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 1249149 Reported Resolution (Å) 2.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 45.8
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cisTEM CTF CORRECTION cisTEM MODEL FITTING Coot 0.9.8.92 MODEL REFINEMENT PHENIX dev_5246 INITIAL EULER ASSIGNMENT cisTEM FINAL EULER ASSIGNMENT cisTEM CLASSIFICATION cisTEM RECONSTRUCTION cisTEM
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 27873297