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 9PCK | pdb_00009pck

Human DNA Polymerase Gamma-RNA-DNA Primer-Template Complex with Incoming ATP


ELECTRON MICROSCOPY
Sample
Cryo-EM Structure of the Catalytic Complex of Human Mitochondrial DNA Polymerase Gamma with an RNA-DNA Primer-Template Heteroduplex
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles1353452
Reported Resolution (Å)2.6
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1
Refinement SpaceREAL
Refinement ProtocolFLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)70
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)400
Maximum Defocus (nm)1800
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification105000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging DetailsObjective aperture of 100 um was used
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARC4.4
IMAGE ACQUISITIONEPU
RECONSTRUCTIONcryoSPARC4.4
MODEL REFINEMENTPHENIX1.21rc1_5127
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION