☰ Navigation Tabs
Bordetella filamentous hemagglutinin (FhaB) C-terminal domain bound to microtubules
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7TQY in silico model AlphaFold
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.844 f_angle_d 0.526 f_chiral_restr 0.041 f_plane_restr 0.004 f_bond_d 0.003
Sample Bordetella filamentous hemagglutinin (FhaB) C-terminal domain bound to microtubules Sample Components Microtubule Bordetella filamentous hemagglutinin (FhaB) C-terminal domain
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 1193804 Reported Resolution (Å) 2.42 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 82 Angular Rotation -0.531
Map-Model Fitting and Refinement Id 1 (7TQY, 7TQY) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.3.1 IMAGE ACQUISITION SerialEM CTF CORRECTION cryoSPARC 4.3.1 MODEL FITTING UCSF ChimeraX 1.9 INITIAL EULER ASSIGNMENT cryoSPARC 4.3.1 RECONSTRUCTION cryoSPARC 4.4.1 MODEL REFINEMENT PHENIX 1.21.2_5419: MODEL REFINEMENT Coot 0.9.8.95
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2197679