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Clostridioides difficile Transferase B Component Trimer
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.275 f_angle_d 0.749 f_chiral_restr 0.05 f_plane_restr 0.005 f_bond_d 0.003
Sample Clostridioides difficile Transferase Component B
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 43047 Reported Resolution (Å) 4.19 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC v4 CTF CORRECTION cryoSPARC v4 MODEL REFINEMENT PHENIX INITIAL EULER ASSIGNMENT cryoSPARC v4 FINAL EULER ASSIGNMENT cryoSPARC v4 CLASSIFICATION cryoSPARC v4
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 679889