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Crystal structure of FAST-ACC-T140D/R132G/S160A mutant in complex with mono(2-hydroxyethyl) terephthalic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8J45
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.3 M (NH4)2SO4, 0.2 M NaCl, 0.1 M Bis-Tris, pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.99 38.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.852 α = 90 b = 50.961 β = 90 c = 83.969 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2024-12-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE TPS 07A 0.97621 NSRRC TPS 07A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 25 95.9 0.046 0.052 0.022 0.992 29.2 5.2 29953
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.63 95.7 0.051 0.056 0.024 0.997 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.57 24.54 28498 1424 95.89 0.10011 0.09765 0.14962 0.1993 RANDOM 8.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.39 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.826 r_dihedral_angle_4_deg 15.267 r_dihedral_angle_3_deg 10.859 r_rigid_bond_restr 7.256 r_dihedral_angle_1_deg 6.69 r_long_range_B_refined 2.762 r_long_range_B_other 2.566 r_angle_refined_deg 2.401 r_scangle_other 2.212 r_scbond_other 2.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.826 r_dihedral_angle_4_deg 15.267 r_dihedral_angle_3_deg 10.859 r_rigid_bond_restr 7.256 r_dihedral_angle_1_deg 6.69 r_long_range_B_refined 2.762 r_long_range_B_other 2.566 r_angle_refined_deg 2.401 r_scangle_other 2.212 r_scbond_other 2.005 r_scbond_it 2.003 r_angle_other_deg 1.846 r_mcangle_it 1.796 r_mcangle_other 1.796 r_mcbond_it 1.684 r_mcbond_other 1.684 r_chiral_restr 0.176 r_bond_refined_d 0.028 r_gen_planes_refined 0.015 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1913 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data reduction PHASER phasing