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Zn-Carbonic Anhydrase II soaked with 3NT under 15 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LUX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.05 40.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.787 α = 90 b = 41.202 β = 104.082 c = 71.952 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.8856 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 30 98.8 0.054 0.058 0.022 0.998 34.8 6.3 85689
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.16 98.9 0.378 0.412 0.16 0.903 4.5 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.14 28.911 85646 4178 98.759 0.153 0.1524 0.175 0.1873 12.087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.323 -0.081 -0.227 -0.049
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 15.937 r_dihedral_angle_6_deg 14.786 r_lrange_other 14.707 r_dihedral_angle_3_deg 10.853 r_scangle_it 8.413 r_scangle_other 8.394 r_dihedral_angle_2_deg 7.661 r_mcangle_other 7.419 r_mcangle_it 7.418 r_dihedral_angle_1_deg 6.884
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 15.937 r_dihedral_angle_6_deg 14.786 r_lrange_other 14.707 r_dihedral_angle_3_deg 10.853 r_scangle_it 8.413 r_scangle_other 8.394 r_dihedral_angle_2_deg 7.661 r_mcangle_other 7.419 r_mcangle_it 7.418 r_dihedral_angle_1_deg 6.884 r_scbond_it 5.953 r_scbond_other 5.931 r_mcbond_it 5.138 r_mcbond_other 5.109 r_rigid_bond_restr 4.33 r_angle_refined_deg 2.062 r_angle_other_deg 0.73 r_nbd_other 0.274 r_symmetry_nbd_refined 0.273 r_xyhbond_nbd_refined 0.225 r_nbd_refined 0.208 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.184 r_symmetry_xyhbond_nbd_refined 0.157 r_symmetry_xyhbond_nbd_other 0.12 r_chiral_restr 0.111 r_symmetry_nbtor_other 0.091 r_metal_ion_refined 0.072 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing