☰ Navigation Tabs
Zn-Carbonic Anhydrase II complexed with 3NPA at 200 K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7Y2A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.08 40.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.083 α = 90 b = 41.418 β = 104.32 c = 72.21 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD RAYONIX MX225-HS 2019-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6D 0.97934 PAL/PLS 6D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 30 99.9 0.159 0.186 0.096 0.955 18 3.6 53079
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.39 99.6 0.349 0.41 0.213 0.85 3.5 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.35 30 50534 2628 99.88 0.1361 0.1341 0.1343 0.17637 0.1772 RANDOM 14.867
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -0.22 -0.07 -0.32
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.432 r_dihedral_angle_2_deg 35.351 r_dihedral_angle_4_deg 25.089 r_sphericity_bonded 14.366 r_dihedral_angle_3_deg 12.741 r_dihedral_angle_1_deg 7.029 r_long_range_B_refined 6.167 r_scangle_other 6.034 r_long_range_B_other 6.013 r_scbond_it 5.186
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.432 r_dihedral_angle_2_deg 35.351 r_dihedral_angle_4_deg 25.089 r_sphericity_bonded 14.366 r_dihedral_angle_3_deg 12.741 r_dihedral_angle_1_deg 7.029 r_long_range_B_refined 6.167 r_scangle_other 6.034 r_long_range_B_other 6.013 r_scbond_it 5.186 r_scbond_other 5.186 r_rigid_bond_restr 4.753 r_mcangle_other 2.828 r_mcangle_it 2.808 r_mcbond_it 2.467 r_angle_refined_deg 2.445 r_mcbond_other 2.439 r_angle_other_deg 1.239 r_chiral_restr 0.177 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing