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Ni- Carbonic Anhydrase II pH 11.0 5.0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LV7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.1 41.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.418 α = 90 b = 41.36 β = 104.14 c = 72.21 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 96.3 0.063 0.068 0.025 0.997 33.5 7.5 73262
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 93.8 0.153 0.164 0.06 0.986 13.1 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.2 30 69635 3611 96.26 0.12082 0.1197 0.127 0.14305 0.1483 RANDOM 11.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.04 0.11 0.07
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.501 r_dihedral_angle_2_deg 34.535 r_dihedral_angle_4_deg 25.689 r_sphericity_bonded 14.973 r_dihedral_angle_3_deg 12.284 r_dihedral_angle_1_deg 6.792 r_long_range_B_refined 6.698 r_rigid_bond_restr 6.332 r_long_range_B_other 5.547 r_scangle_other 4.03
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.501 r_dihedral_angle_2_deg 34.535 r_dihedral_angle_4_deg 25.689 r_sphericity_bonded 14.973 r_dihedral_angle_3_deg 12.284 r_dihedral_angle_1_deg 6.792 r_long_range_B_refined 6.698 r_rigid_bond_restr 6.332 r_long_range_B_other 5.547 r_scangle_other 4.03 r_scbond_other 3.394 r_scbond_it 3.39 r_angle_refined_deg 2.508 r_mcangle_other 2.454 r_mcangle_it 2.418 r_mcbond_it 2.101 r_mcbond_other 1.967 r_angle_other_deg 1.424 r_chiral_restr 0.201 r_bond_refined_d 0.031 r_gen_planes_refined 0.016 r_gen_planes_other 0.013 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing