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Zn- Carbonic Anhydrase II pH 11.0 7.0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LUY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.11 41.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.368 α = 90 b = 41.653 β = 104.29 c = 72.296 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 95.2 0.054 0.058 0.021 0.997 37.1 7.6 72835
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 92 0.334 0.359 0.129 0.952 6 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.2 29.24 69206 3614 95.15 0.12583 0.12496 0.1291 0.14223 0.1434 RANDOM 14.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.01 0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 51.483 r_dihedral_angle_2_deg 34.745 r_dihedral_angle_4_deg 24.436 r_sphericity_bonded 12.706 r_dihedral_angle_3_deg 11.634 r_dihedral_angle_1_deg 6.978 r_rigid_bond_restr 6.489 r_long_range_B_refined 6.396 r_long_range_B_other 6.125 r_mcangle_other 5.585
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 51.483 r_dihedral_angle_2_deg 34.745 r_dihedral_angle_4_deg 24.436 r_sphericity_bonded 12.706 r_dihedral_angle_3_deg 11.634 r_dihedral_angle_1_deg 6.978 r_rigid_bond_restr 6.489 r_long_range_B_refined 6.396 r_long_range_B_other 6.125 r_mcangle_other 5.585 r_mcangle_it 5.575 r_mcbond_it 4.473 r_mcbond_other 4.387 r_scangle_other 3.926 r_scbond_it 3.514 r_scbond_other 3.514 r_angle_refined_deg 2.429 r_angle_other_deg 1.195 r_chiral_restr 0.178 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_gen_planes_other 0.006 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing