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Zn- Carbonic Anhydrase II pH 7.8 1.5 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.03 39.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.837 α = 90 b = 41.054 β = 104.11 c = 71.555 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 96.4 0.067 0.072 0.026 0.997 31.3 7.5 71483
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 94 0.682 0.733 0.268 0.834 3.5 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.2 30 67637 3508 96.36 0.13402 0.13291 0.1413 0.15638 0.1641 RANDOM 16.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 -0.32 -0.61 0.57
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.695 r_dihedral_angle_2_deg 34.629 r_dihedral_angle_4_deg 20.481 r_sphericity_bonded 18.101 r_dihedral_angle_3_deg 13.445 r_long_range_B_refined 7.924 r_rigid_bond_restr 7.169 r_dihedral_angle_1_deg 7.117 r_long_range_B_other 6.574 r_scangle_other 5.577
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.695 r_dihedral_angle_2_deg 34.629 r_dihedral_angle_4_deg 20.481 r_sphericity_bonded 18.101 r_dihedral_angle_3_deg 13.445 r_long_range_B_refined 7.924 r_rigid_bond_restr 7.169 r_dihedral_angle_1_deg 7.117 r_long_range_B_other 6.574 r_scangle_other 5.577 r_scbond_it 4.851 r_scbond_other 4.851 r_angle_refined_deg 3.118 r_mcangle_other 2.719 r_mcangle_it 2.693 r_mcbond_it 2.422 r_mcbond_other 2.393 r_angle_other_deg 1.579 r_chiral_restr 0.203 r_bond_refined_d 0.037 r_gen_planes_refined 0.016 r_gen_planes_other 0.013 r_bond_other_d 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing