☰ Navigation Tabs
Tetrameric complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N93
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 56.384 r_long_range_B_other 56.384 r_scangle_other 43.684 r_mcangle_other 31.329 r_mcangle_it 31.324 r_scbond_it 28.378 r_scbond_other 28.369 r_mcbond_it 22.048 r_mcbond_other 22.047 r_dihedral_angle_3_deg 11.33
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 56.384 r_long_range_B_other 56.384 r_scangle_other 43.684 r_mcangle_other 31.329 r_mcangle_it 31.324 r_scbond_it 28.378 r_scbond_other 28.369 r_mcbond_it 22.048 r_mcbond_other 22.047 r_dihedral_angle_3_deg 11.33 r_dihedral_angle_1_deg 8.246 r_dihedral_angle_2_deg 6.695 r_angle_refined_deg 1.503 r_angle_other_deg 0.691 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Purified Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 170764 Reported Resolution (Å) 3.15 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C4
Map-Model Fitting and Refinement Id 1 (1n93) Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 43
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC MODEL FITTING UCSF ChimeraX MODEL FITTING Coot MODEL REFINEMENT Servalcat INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION