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Cryo-EM structure of the myxol-bound light-driven chloride ion-pumping rhodopsin, NM-R3
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 23.685 r_long_range_B_other 23.684 r_scangle_other 21.849 r_dihedral_angle_2_deg 16.314 r_scbond_it 15.859 r_scbond_other 15.858 r_dihedral_angle_3_deg 15.098 r_mcangle_it 12.122 r_mcangle_other 12.121 r_mcbond_it 10.811
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 23.685 r_long_range_B_other 23.684 r_scangle_other 21.849 r_dihedral_angle_2_deg 16.314 r_scbond_it 15.859 r_scbond_other 15.858 r_dihedral_angle_3_deg 15.098 r_mcangle_it 12.122 r_mcangle_other 12.121 r_mcbond_it 10.811 r_mcbond_other 10.773 r_dihedral_angle_1_deg 5.799 r_angle_refined_deg 2.131 r_angle_other_deg 0.842 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_gen_planes_other 0.008 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 791219 Reported Resolution (Å) 2.48 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 60.425
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION