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Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 23.713 r_lrange_other 23.713 r_dihedral_angle_3_deg 18.036 r_dihedral_angle_6_deg 15.024 r_scangle_it 13.736 r_scangle_other 13.736 r_mcangle_it 13.12 r_mcangle_other 13.12 r_scbond_it 8.445 r_scbond_other 8.445
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 23.713 r_lrange_other 23.713 r_dihedral_angle_3_deg 18.036 r_dihedral_angle_6_deg 15.024 r_scangle_it 13.736 r_scangle_other 13.736 r_mcangle_it 13.12 r_mcangle_other 13.12 r_scbond_it 8.445 r_scbond_other 8.445 r_mcbond_it 8.26 r_mcbond_other 8.26 r_dihedral_angle_1_deg 5.456 r_dihedral_angle_2_deg 4.48 r_angle_refined_deg 1.24 r_dihedral_angle_other_2_deg 0.682 r_angle_other_deg 0.427 r_xyhbond_nbd_refined 0.234 r_symmetry_nbd_other 0.22 r_nbtor_refined 0.219 r_nbd_refined 0.19 r_ncsr_local_group_1 0.182 r_metal_ion_refined 0.179 r_symmetry_xyhbond_nbd_other 0.127 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.054 r_chiral_restr_other 0.046 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_gen_planes_other 0.001 r_bond_other_d
Sample Ribosome in complex with P- and E-site tRNAs, mRNA, nascent peptide, and thermospermine molecules
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 58638 Reported Resolution (Å) 2.25 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 53.85
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION