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Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 21.358 r_lrange_other 21.358 r_dihedral_angle_3_deg 17.76 r_dihedral_angle_6_deg 14.527 r_scangle_it 12.816 r_scangle_other 12.816 r_mcangle_it 11.708 r_mcangle_other 11.708 r_scbond_it 7.952 r_scbond_other 7.952
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 21.358 r_lrange_other 21.358 r_dihedral_angle_3_deg 17.76 r_dihedral_angle_6_deg 14.527 r_scangle_it 12.816 r_scangle_other 12.816 r_mcangle_it 11.708 r_mcangle_other 11.708 r_scbond_it 7.952 r_scbond_other 7.952 r_mcbond_it 7.533 r_mcbond_other 7.533 r_dihedral_angle_1_deg 5.653 r_dihedral_angle_2_deg 5.059 r_angle_refined_deg 1.302 r_dihedral_angle_other_2_deg 0.666 r_angle_other_deg 0.444 r_nbtor_refined 0.219 r_xyhbond_nbd_refined 0.218 r_symmetry_nbd_other 0.216 r_nbd_refined 0.19 r_ncsr_local_group_1 0.183 r_metal_ion_refined 0.161 r_symmetry_xyhbond_nbd_other 0.149 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.057 r_chiral_restr_other 0.056 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_gen_planes_other 0.001 r_bond_other_d
Sample Ribosome in complex with P- and E-site tRNAs, mRNA, nascent peptide, and thermospermine molecules
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 31655 Reported Resolution (Å) 2.25 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 53.85
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION