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Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.679 r_lrange_other 17.679 r_dihedral_angle_3_deg 15.917 r_dihedral_angle_6_deg 13.515 r_scangle_it 11.977 r_scangle_other 11.977 r_mcangle_it 11.227 r_mcangle_other 11.227 r_scbond_it 7.285 r_scbond_other 7.285
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.679 r_lrange_other 17.679 r_dihedral_angle_3_deg 15.917 r_dihedral_angle_6_deg 13.515 r_scangle_it 11.977 r_scangle_other 11.977 r_mcangle_it 11.227 r_mcangle_other 11.227 r_scbond_it 7.285 r_scbond_other 7.285 r_dihedral_angle_2_deg 7.172 r_mcbond_it 7.023 r_mcbond_other 7.023 r_dihedral_angle_1_deg 6.496 r_angle_refined_deg 1.688 r_dihedral_angle_other_2_deg 0.58 r_angle_other_deg 0.547 r_nbtor_refined 0.222 r_nbd_refined 0.206 r_symmetry_nbd_other 0.205 r_xyhbond_nbd_refined 0.205 r_metal_ion_refined 0.16 r_symmetry_xyhbond_nbd_other 0.122 r_ncsr_local_group_1 0.117 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.071 r_chiral_restr_other 0.05 r_gen_planes_refined 0.011 r_bond_refined_d 0.007 r_gen_planes_other 0.001 r_bond_other_d
Sample Ribosome in complex with P- and E-site tRNAs, mRNA, polypeptide, and thermospermine
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 152921 Reported Resolution (Å) 2.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION