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Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.669 r_dihedral_angle_6_deg 13.285 r_lrange_it 8.679 r_lrange_other 8.679 r_dihedral_angle_1_deg 5.988 r_dihedral_angle_2_deg 5.437 r_scangle_it 5.148 r_scangle_other 5.148 r_mcangle_it 4.751 r_mcangle_other 4.751
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.669 r_dihedral_angle_6_deg 13.285 r_lrange_it 8.679 r_lrange_other 8.679 r_dihedral_angle_1_deg 5.988 r_dihedral_angle_2_deg 5.437 r_scangle_it 5.148 r_scangle_other 5.148 r_mcangle_it 4.751 r_mcangle_other 4.751 r_scbond_it 3.008 r_scbond_other 3.008 r_mcbond_it 2.806 r_mcbond_other 2.806 r_angle_refined_deg 1.174 r_dihedral_angle_other_2_deg 0.573 r_angle_other_deg 0.398 r_nbtor_refined 0.214 r_nbd_refined 0.195 r_symmetry_nbd_other 0.194 r_xyhbond_nbd_refined 0.164 r_metal_ion_refined 0.145 r_symmetry_xyhbond_nbd_other 0.141 r_ncsr_local_group_1 0.117 r_symmetry_nbtor_other 0.078 r_chiral_restr_other 0.068 r_chiral_restr 0.05 r_gen_planes_refined 0.008 r_bond_refined_d 0.004 r_gen_planes_other 0.001 r_bond_other_d
Sample Ribosome in complex with P- and E-site tRNAs, mRNA, and polypeptide
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 243821 Reported Resolution (Å) 1.82 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION