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Ferredoxin Wild-type -Oxidised state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A70
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 100 mM Na K Phosphate pH 7-8,
26-36 M Ammonium Sulphate
Crystal Properties Matthews coefficient Solvent content 2.17 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.05 α = 90 b = 62.05 β = 90 c = 85.566 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2020-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.62 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.19 50.232 100 0.1 0.02 1 14.8 25.3 54217
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 99.7 3.2 0.93 0.378 0.5 24.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.19 50.232 54122 2709 99.956 0.157 0.1557 0.1623 0.178 0.1805 18.033
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.11 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.723 r_dihedral_angle_3_deg 11.621 r_dihedral_angle_1_deg 6.342 r_dihedral_angle_4_deg 6.304 r_rigid_bond_restr 4.963 r_lrange_it 3.724 r_scbond_other 3.618 r_scangle_it 3.597 r_scbond_it 3.596 r_scangle_other 3.589
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.723 r_dihedral_angle_3_deg 11.621 r_dihedral_angle_1_deg 6.342 r_dihedral_angle_4_deg 6.304 r_rigid_bond_restr 4.963 r_lrange_it 3.724 r_scbond_other 3.618 r_scangle_it 3.597 r_scbond_it 3.596 r_scangle_other 3.589 r_lrange_other 3.528 r_mcbond_it 2.389 r_angle_refined_deg 2.358 r_mcangle_other 2.242 r_mcangle_it 1.918 r_mcbond_other 1.743 r_angle_other_deg 1.64 r_nbd_refined 0.283 r_symmetry_nbd_other 0.208 r_nbtor_refined 0.175 r_nbd_other 0.126 r_chiral_restr 0.123 r_xyhbond_nbd_refined 0.123 r_symmetry_xyhbond_nbd_refined 0.1 r_symmetry_nbtor_other 0.093 r_symmetry_nbd_refined 0.085 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 753 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing