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CryoEM structure of the human INO80-Hexasome complex
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 96.221 r_long_range_B_other 96.221 r_scangle_other 86.033 r_mcangle_it 60.607 r_mcangle_other 60.606 r_scbond_it 54.808 r_scbond_other 54.807 r_mcbond_it 38.931 r_mcbond_other 38.931 r_dihedral_angle_3_deg 13.763
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 96.221 r_long_range_B_other 96.221 r_scangle_other 86.033 r_mcangle_it 60.607 r_mcangle_other 60.606 r_scbond_it 54.808 r_scbond_other 54.807 r_mcbond_it 38.931 r_mcbond_other 38.931 r_dihedral_angle_3_deg 13.763 r_dihedral_angle_2_deg 9.321 r_dihedral_angle_1_deg 8.447 r_angle_refined_deg 2.159 r_angle_other_deg 0.723 r_chiral_restr 0.109 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample CryoEM structure of the human INO80-Hexasome complex Sample Components Histone Hexamer Synthetic deoxyribonucleic acid
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 34444 Reported Resolution (Å) 3.35 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target MAXIMUM LIKELIHOOD WITH PHASES Overall B Value 134.96 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 1
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.5.3 CTF CORRECTION cryoSPARC 4.5.3 MODEL FITTING Coot 0.9.8.93 MODEL FITTING ISOLDE 1.8 MODEL REFINEMENT REFMAC 5.8.0425 INITIAL EULER ASSIGNMENT RELION 4.0 FINAL EULER ASSIGNMENT RELION 4.0 RECONSTRUCTION cryoSPARC 4.5.3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 15713359 Minimum particle diameter (A) = 120
Maximum particle diameter (A) = 240