RNA binding domain of Turnip crinkle virus p38, p38R
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 2 | 2D 1H-13C HSQC aliphatic | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 3 | 2D 1H-13C HSQC aromatic | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 4 | 3D HNCACB | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 5 | 3D 1H-15N TOCSY | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 6 | 3D HCCH-TOCSY | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 7 | 3D 1H-15N NOESY | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 8 | 3D 1H-13C NOESY aliphatic | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| 9 | 3D 1H-13C NOESY aromatic | 1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 50 mM | 7.0 | 1 bar | 283 | Bruker AVANCE III 800 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | NMRViewJ | Johnson, One Moon Scientific | |
| 2 | structure calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 5 | structure calculation | ARIA | Linge, O'Donoghue and Nilges | |
| 3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 4 | peak picking | NMRViewJ | Johnson, One Moon Scientific | |
| 6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
