9GAG

Human PEX5 TPR domain in complex with PEX14 KIPSWQIPV peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY0.4 mM [U-100% 13C; U-100% 15N; U-80% 2H] human PEX5 TPR domain, 4 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT93% H2O/7% D2O83 mM6.51 atm298Bruker AVANCE III 900
22D 1H-1H NOESY1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O83 mM6.51 atm298Bruker AVANCE III 500
32D 1H-1H TOCSY1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O83 mM6.51 atm298Bruker AVANCE III 500
42D 1H-13C HSQC1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O83 mM6.51 atm298Bruker AVANCE III 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III900
2BrukerAVANCE III500
NMR Refinement
MethodDetailsSoftware
molecular dynamicsCcpNmr Analysis
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.6Bruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingNMRFAM-SPARKY3T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco
4peak pickingCcpNmr Analysis2.4.2CCPN
5chemical shift assignmentNMRFAM-SPARKYT. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco
7structure calculationCYANA3.3Guntert, Mumenthaler and Wuthrich
8structure calculationHADDOCK2.4Bonvin
9refinementHADDOCK2.4Bonvin