☰ Navigation Tabs
Carotenoid cleavage oxygenase from Moesziomyces aphidis bound to acetate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 20%w/vPolyethyleneglycol 3,350 200mM Lithiumacetate 30% GOL
Crystal Properties Matthews coefficient Solvent content 2.28 45.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.155 α = 90 b = 85.957 β = 100.336 c = 93.87 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.03322 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 46.17 97.7 0.054 0.073 0.048 0.998 9.5 3.8 216121
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 1.005 1.325 0.851 0.432 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.4 46.17 215828 10853 97.547 0.169 0.1676 0.1676 0.1929 0.193 21.317
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.299 -0.363 0.555 -0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.747 r_dihedral_angle_3_deg 12.682 r_dihedral_angle_2_deg 8.321 r_dihedral_angle_1_deg 7.241 r_lrange_it 5.241 r_scangle_it 4.246 r_scbond_it 2.997 r_mcangle_it 2.295 r_angle_refined_deg 1.966 r_mcbond_it 1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.747 r_dihedral_angle_3_deg 12.682 r_dihedral_angle_2_deg 8.321 r_dihedral_angle_1_deg 7.241 r_lrange_it 5.241 r_scangle_it 4.246 r_scbond_it 2.997 r_mcangle_it 2.295 r_angle_refined_deg 1.966 r_mcbond_it 1.69 r_nbtor_refined 0.307 r_nbd_refined 0.197 r_symmetry_nbd_refined 0.173 r_symmetry_xyhbond_nbd_refined 0.172 r_chiral_restr 0.128 r_xyhbond_nbd_refined 0.113 r_ncsr_local_group_1 0.067 r_bond_refined_d 0.012 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8420 Nucleic Acid Atoms Solvent Atoms 1320 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing