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The RSL-D46H - sulfonato-calix[8]arene complex, acetate pH 4.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Z5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4 277.15 20 mM sodium acetate pH 4.0
50 mM sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.66 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.222 α = 83.59 b = 51.339 β = 83.11 c = 69.472 γ = 67.94
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.98011 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 47.46 97 0.073 0.086 0.046 0.995 5.6 3.4 48037 22.94
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.9 96.4 0.416 0.489 0.256 0.895 2.1 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.87 47.45 1.97 48013 2253 96.97 0.2121 0.2103 0.2102 0.2486 0.2485 29.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.9217 f_angle_d 0.6998 f_chiral_restr 0.049 f_bond_d 0.0053 f_plane_restr 0.0046
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4140 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 528
Software Software Software Name Purpose PHASER phasing PHENIX refinement XDS data reduction Aimless data scaling