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Coxsackievirus A9 bound with CL213.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8AT5
Sample Human coxsackievirus A9 (strain Griggs)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details Sample was incubated for 15 s on the grid before blotted from the front for 1.5 s.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 90678 Reported Resolution (Å) 2.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (8AT5) Refinement Space Refinement Protocol Refinement Target Overall B Value 70 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Scipion 3.0.8 CTF CORRECTION Scipion 3.0.8 MODEL FITTING UCSF ChimeraX 1.5 MODEL FITTING Coot 0.9.8.1 INITIAL EULER ASSIGNMENT Scipion 3.0.8 FINAL EULER ASSIGNMENT Scipion 3.0.8 CLASSIFICATION Scipion 3.0.8 RECONSTRUCTION Scipion 3.0.8 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 216957