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FGD2 (Rv0132c) from Mycobacterium tuberculosis crystallised with Anderson-Evans polyoxotungstate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277.15 0.12M alcohols, 0.1M Buffer system 1 (MES, Imidazole pH 6.5), Precipitant mix 2 Morpheus condition D2 with 10mM TEW
Crystal Properties Matthews coefficient Solvent content 2.9 57.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.856 α = 90 b = 92.161 β = 90 c = 100.279 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 99 PIXEL DECTRIS EIGER2 XE 16M 2022-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 54.15 97.9 0.165 0.172 0.047 0.998 11.4 12.7 144578
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.47 80.4 1.339 0.475 0.654 1.4 8.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 54.126 144482 7470 97.931 0.117 0.1154 0.12 0.1463 0.1488 24.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.479 0.257 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.654 r_lrange_it 15.256 r_dihedral_angle_3_deg 11.872 r_scangle_it 7.209 r_dihedral_angle_1_deg 6.269 r_dihedral_angle_2_deg 5.852 r_mcangle_it 5.497 r_rigid_bond_restr 5.164 r_scbond_it 5.152 r_mcbond_it 3.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.654 r_lrange_it 15.256 r_dihedral_angle_3_deg 11.872 r_scangle_it 7.209 r_dihedral_angle_1_deg 6.269 r_dihedral_angle_2_deg 5.852 r_mcangle_it 5.497 r_rigid_bond_restr 5.164 r_scbond_it 5.152 r_mcbond_it 3.76 r_angle_refined_deg 1.912 r_nbtor_refined 0.314 r_symmetry_nbd_refined 0.254 r_symmetry_xyhbond_nbd_refined 0.241 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.118 r_bond_refined_d 0.014 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4955 Nucleic Acid Atoms Solvent Atoms 963 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling CRANK2 phasing