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KAT6A IN COMPLEX WITH SMALL MOLECULE INHIBITOR BAY-184
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OZU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.3 298 RESERVOIR 100 MILLIMOLAR HEPES PH 7.1-7.5, 17-21% PEG 3350 (W/V). PROTEIN CONCENTRATION 7.1 MG/ML, PROTEIN PREINCUBATED WITH 4 MILLIMOLAR ACETYL-COA. DROPS MADE FROM 0.8 MICROLITER PROTEIN AND 0.8 MICROLITER RESERVOIR SOLUTION.
CRYSTAL WASHED IN RESERVOIR SOLUTION, THEN COMPOUND BACKSOAKED FOR 10 DAYS AT 10 MILLIMOLAR.
Crystal Properties Matthews coefficient Solvent content 2.25 45.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.805 α = 92.22 b = 59.921 β = 90.82 c = 65.85 γ = 103.2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 65.79 97.4 0.086 0.101 0.997 11.5 3.5 15260 68.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.85 91.6 1.188 1.307 0.606 1.09 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.69 44.63 14496 763 97.33 0.199 0.19703 0.2021 0.23766 0.2407 RANDOM 73.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 -0.4 -0.22 -0.02 0.09 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.594 r_dihedral_angle_3_deg 16.842 r_dihedral_angle_4_deg 16.461 r_long_range_B_other 7.758 r_long_range_B_refined 7.753 r_dihedral_angle_1_deg 6.458 r_scangle_other 5.416 r_mcangle_it 4.833 r_mcangle_other 4.833 r_scbond_it 3.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.594 r_dihedral_angle_3_deg 16.842 r_dihedral_angle_4_deg 16.461 r_long_range_B_other 7.758 r_long_range_B_refined 7.753 r_dihedral_angle_1_deg 6.458 r_scangle_other 5.416 r_mcangle_it 4.833 r_mcangle_other 4.833 r_scbond_it 3.333 r_scbond_other 3.324 r_mcbond_it 2.913 r_mcbond_other 2.913 r_angle_refined_deg 1.268 r_angle_other_deg 1.032 r_chiral_restr 0.048 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4343 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement pointless data scaling XDS data reduction PHASER phasing