9FIH

Crystal Structure of NuoEF variant P228R(NuoF) from Aquifex aeolicus bound to NADH under anoxic conditions after 10 min soaking

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.9	281	0.1 M BisTris pH 6.9, 1.55 M ammonium sulfate, 150 mM NaCl

Crystal Properties
Matthews coefficient	Solvent content
2.71	54.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.522	α = 90
b = 116.359	β = 90
c = 190.184	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2020-09-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.9724	ESRF	ID23-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.08	48.143	99.8	0.097	0.992	6.3	4.3		85376

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.08	2.12			0.498	0.687

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	2.08	48.143	85297	4272	99.67	0.18	0.1786	0.213	Rfree flags were transferred from scaled data of an isomorphous crystal of the same variant	24.32

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.286			0.377		-0.663

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_other_3_deg	13.621
r_dihedral_angle_6_deg	13.325
r_dihedral_angle_3_deg	11.91
r_dihedral_angle_2_deg	7.492
r_dihedral_angle_1_deg	6.119
r_lrange_it	3.803
r_lrange_other	3.574
r_scangle_it	1.607
r_scangle_other	1.511
r_angle_refined_deg	1.41
r_scbond_it	0.971
r_mcangle_other	0.965
r_mcangle_it	0.964
r_scbond_other	0.908
r_mcbond_it	0.566
r_mcbond_other	0.562
r_angle_other_deg	0.488
r_nbd_refined	0.212
r_symmetry_xyhbond_nbd_refined	0.199
r_symmetry_nbd_other	0.19
r_nbtor_refined	0.184
r_xyhbond_nbd_refined	0.167
r_nbd_other	0.158
r_symmetry_nbd_refined	0.118
r_xyhbond_nbd_other	0.111
r_symmetry_nbtor_other	0.074
r_chiral_restr	0.068
r_symmetry_xyhbond_nbd_other	0.056
r_metal_ion_refined	0.02
r_bond_refined_d	0.006
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9110
Nucleic Acid Atoms
Solvent Atoms	924
Heterogen Atoms	228

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
REFMAC	phasing