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Glutathione transferase epsilon 1 from Drosophila melanogaster in complex with glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IMI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 20 % w/v PEG 8000, 100 mM MES pH 6.0 and 200 mM Ca acetate
Crystal Properties Matthews coefficient Solvent content 3.21 61.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.038 α = 90 b = 82.919 β = 90 c = 95.543 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 1.14071 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 41.46 99.2 0.054 1 17.5 6.6 60131
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.7 0.812 0.7 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.8 41.459 60131 3053 99.685 0.155 0.1537 0.1538 0.1766 0.1767 29.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.323 1.067 -0.744
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.804 r_dihedral_angle_3_deg 14.718 r_lrange_it 8.266 r_lrange_other 8.233 r_scangle_it 7.516 r_scangle_other 7.514 r_dihedral_angle_2_deg 6.37 r_dihedral_angle_1_deg 5.751 r_scbond_it 5.123 r_scbond_other 5.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.804 r_dihedral_angle_3_deg 14.718 r_lrange_it 8.266 r_lrange_other 8.233 r_scangle_it 7.516 r_scangle_other 7.514 r_dihedral_angle_2_deg 6.37 r_dihedral_angle_1_deg 5.751 r_scbond_it 5.123 r_scbond_other 5.122 r_mcangle_it 3.685 r_mcangle_other 3.684 r_mcbond_it 2.888 r_mcbond_other 2.874 r_angle_refined_deg 1.662 r_angle_other_deg 0.573 r_symmetry_xyhbond_nbd_refined 0.233 r_nbd_refined 0.22 r_nbtor_refined 0.184 r_symmetry_nbd_other 0.181 r_nbd_other 0.133 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.1 r_symmetry_nbd_refined 0.085 r_symmetry_nbtor_other 0.075 r_ncsr_local_group_1 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3482 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling BALBES phasing