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CDK2-cyclin A in complex with FragLite 10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GUC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 Protein at 10 mg/ml. 0.6 to 0.8 M KCl, 0.9 to 1.2 M (NH4)2SO4, and 100 mM HEPES pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.97 58.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.121 α = 90 b = 133.849 β = 90 c = 148.042 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.91839 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 148.04 94.4 0.116 0.999 16.8 13.5 59478
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.34 2.4 100 1.624 0.658 1.9 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.34 99.483 59403 3102 94.398 0.185 0.1829 0.1831 0.2214 0.2216 58.129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 0.164 0.896
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.583 r_dihedral_angle_2_deg 15.756 r_dihedral_angle_3_deg 14.943 r_lrange_it 13.687 r_scangle_it 10.298 r_mcangle_it 7.538 r_scbond_it 7.17 r_dihedral_angle_1_deg 6.401 r_mcbond_it 5.165 r_angle_refined_deg 1.685
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.583 r_dihedral_angle_2_deg 15.756 r_dihedral_angle_3_deg 14.943 r_lrange_it 13.687 r_scangle_it 10.298 r_mcangle_it 7.538 r_scbond_it 7.17 r_dihedral_angle_1_deg 6.401 r_mcbond_it 5.165 r_angle_refined_deg 1.685 r_nbtor_refined 0.318 r_symmetry_nbd_refined 0.256 r_nbd_refined 0.222 r_symmetry_xyhbond_nbd_refined 0.213 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.118 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8711 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 154
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing