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HSV-1 DNA polymerase-processivity factor complex in exonuclease state active site with 1-bp DNA mismatch
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LUF
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 16.313 r_lrange_other 16.301 r_dihedral_angle_6_deg 15.189 r_dihedral_angle_3_deg 10.948 r_dihedral_angle_other_2_deg 10.189 r_scangle_it 9.464 r_scangle_other 9.463 r_dihedral_angle_2_deg 8.495 r_mcangle_it 6.904 r_mcangle_other 6.903
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 16.313 r_lrange_other 16.301 r_dihedral_angle_6_deg 15.189 r_dihedral_angle_3_deg 10.948 r_dihedral_angle_other_2_deg 10.189 r_scangle_it 9.464 r_scangle_other 9.463 r_dihedral_angle_2_deg 8.495 r_mcangle_it 6.904 r_mcangle_other 6.903 r_dihedral_angle_1_deg 6.22 r_scbond_it 5.521 r_scbond_other 5.517 r_mcbond_it 4.195 r_mcbond_other 4.195 r_angle_refined_deg 1.419 r_angle_other_deg 0.5 r_nbd_refined 0.201 r_symmetry_nbd_other 0.174 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.132 r_metal_ion_refined 0.102 r_chiral_restr 0.075 r_symmetry_nbtor_other 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_bond_other_d
Sample HSV-1 DNA polymerase-processivity factor complex in exonuclease state with 1-bp DNA mismatch Sample Components DNA polymerase-processivity factor DNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 163943 Reported Resolution (Å) 2.12 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7LUF) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 58
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.4 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING Coot 0.9.8.92 MODEL REFINEMENT Coot 0.9.8.92 INITIAL EULER ASSIGNMENT cryoSPARC 4.4 FINAL EULER ASSIGNMENT cryoSPARC 4.4 RECONSTRUCTION cryoSPARC 4.4
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE