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HSV-1 DNA polymerase-processivity factor complex in exonuclease state with 1-bp DNA mismatch
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LUF
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.811 r_lrange_other 22.802 r_dihedral_angle_6_deg 15.395 r_mcangle_it 11.147 r_mcangle_other 11.147 r_scangle_it 11.038 r_scangle_other 11.037 r_dihedral_angle_3_deg 10.751 r_mcbond_it 6.601 r_mcbond_other 6.601
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.811 r_lrange_other 22.802 r_dihedral_angle_6_deg 15.395 r_mcangle_it 11.147 r_mcangle_other 11.147 r_scangle_it 11.038 r_scangle_other 11.037 r_dihedral_angle_3_deg 10.751 r_mcbond_it 6.601 r_mcbond_other 6.601 r_dihedral_angle_1_deg 6.569 r_scbond_it 6.394 r_scbond_other 6.393 r_dihedral_angle_2_deg 4.506 r_angle_refined_deg 1.486 r_angle_other_deg 0.512 r_dihedral_angle_other_2_deg 0.239 r_metal_ion_refined 0.204 r_nbd_refined 0.2 r_symmetry_nbd_other 0.18 r_symmetry_xyhbond_nbd_other 0.173 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.072 r_symmetry_nbtor_other 0.071 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_gen_planes_other 0.001 r_bond_other_d
Sample HSV-1 DNA polymerase-processivity factor complex in exonuclease state with 1-bp DNA mismatch Sample Components DNA polymerase-processivity factor DNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 577658 Reported Resolution (Å) 2.12 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7LUF) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 58
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.4 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING Coot 0.9.8.92 INITIAL EULER ASSIGNMENT cryoSPARC 4.4 FINAL EULER ASSIGNMENT cryoSPARC 4.4 RECONSTRUCTION cryoSPARC 4.4 MODEL REFINEMENT Coot 0.9.8.92
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE