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FKFGG(DPN)(DGL)(DPN)GG, a cyclic peptide with mixed chirality
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 298 dimethylsulfoxide and water
Crystal Properties Matthews coefficient Solvent content 1.75 29.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 14.13 α = 90 b = 29.32 β = 103.77 c = 9.52 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 0.979330 NSLS-II 17-ID-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 14.66 94.3 0.113 0.12 0.996 10.7 9.1 2926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 0.35 0.379 0.972
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.1 14.66 2926 293 94.448 0.13 0.1292 0.1314 0.1356 0.1393 11.145
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.063 0.294 0.956 -1.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 9.653 r_dihedral_angle_3_deg 6.74 r_angle_other_deg 6.519 r_dihedral_angle_1_deg 4.795 r_rigid_bond_restr 4.604 r_lrange_it 2.873 r_scangle_other 2.352 r_scangle_it 2.347 r_angle_refined_deg 1.998 r_scbond_other 1.743
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 9.653 r_dihedral_angle_3_deg 6.74 r_angle_other_deg 6.519 r_dihedral_angle_1_deg 4.795 r_rigid_bond_restr 4.604 r_lrange_it 2.873 r_scangle_other 2.352 r_scangle_it 2.347 r_angle_refined_deg 1.998 r_scbond_other 1.743 r_scbond_it 1.73 r_lrange_other 1.518 r_mcangle_it 0.688 r_mcangle_other 0.683 r_mcbond_it 0.501 r_mcbond_other 0.495 r_symmetry_nbtor_other 0.278 r_nbd_other 0.243 r_symmetry_nbd_other 0.241 r_nbtor_refined 0.227 r_symmetry_xyhbond_nbd_refined 0.182 r_bond_other_d 0.18 r_nbd_refined 0.172 r_xyhbond_nbd_refined 0.125 r_symmetry_nbd_refined 0.061 r_chiral_restr 0.058 r_gen_planes_refined 0.024 r_bond_refined_d 0.017 r_gen_planes_other 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 78 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction SHELXD phasing