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Assembly and functional mechanisms of the Hsp70-Hsp40 chaperone machinery
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 500 uM 13C/15N labeled DnaJ2 & DnaK fusion, 5 % D2O, 100 mM NaCl, 50 mM Phosphate Buffer System, 95 % H2O 90% H2O/10% D2O 150 mM 6.8 1 atm 303 Bruker AVANCE NEO 600 2 3D HNCACB 500 uM 13C/15N labeled DnaJ2 & DnaK fusion, 5 % D2O, 100 mM NaCl, 50 mM Phosphate Buffer System, 95 % H2O 90% H2O/10% D2O 150 mM 6.8 1 atm 303 Bruker AVANCE NEO 700 3 3D CBCA(CO)NH 500 uM 13C/15N labeled DnaJ2 & DnaK fusion, 5 % D2O, 100 mM NaCl, 50 mM Phosphate Buffer System, 95 % H2O 90% H2O/10% D2O 150 mM 6.8 1 atm 303 Bruker AVANCE NEO 600 4 3D HNCO 500 uM 13C/15N labeled DnaJ2 & DnaK fusion, 5 % D2O, 100 mM NaCl, 50 mM Phosphate Buffer System, 95 % H2O 90% H2O/10% D2O 150 mM 6.8 1 atm 303 Bruker AVANCE NEO 700 5 3D 1H-15N TOCSY 500 uM 13C/15N labeled DnaJ2 & DnaK fusion, 5 % D2O, 100 mM NaCl, 50 mM Phosphate Buffer System, 95 % H2O 90% H2O/10% D2O 150 mM 6.8 1 atm 303 Bruker AVANCE NEO 700 6 3D 1H-15N NOESY 500 uM 13C/15N labeled DnaJ2 & DnaK fusion, 5 % D2O, 100 mM NaCl, 50 mM Phosphate Buffer System, 95 % H2O 90% H2O/10% D2O 150 mM 6.8 1 atm 303 Bruker AVANCE NEO 700 7 3D 1H-13C NOESY 500 uM 13C/15N labeled DnaJ2 & DnaK fusion, 5 % D2O, 100 mM NaCl, 50 mM Phosphate Buffer System, 95 % H2O 90% H2O/10% D2O 150 mM 6.8 1 atm 303 Bruker AVANCE NEO 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 700 2 Bruker AVANCE NEO 600
NMR Refinement Method Details Software molecular dynamics CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRFAM-SPARKY Lee W, Westler WM, Bahrami A, Eghbalnia HR, Markley JL 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 peak picking NMRFAM-SPARKY Lee W, Westler WM, Bahrami A, Eghbalnia HR, Markley JL