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Human mitochondrial ClpP in complex with Bortezomib
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TG6
Sample Human mitochondrial ClpP in complex with Bortezomib
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details The sample was prepared using manual blot-and-plunge freezing method in cold room (4 celsius)
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 224782 Reported Resolution (Å) 2.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry D7
Map-Model Fitting and Refinement Id 1 (1TG6) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 100 Maximum Defocus (nm) 3280 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 150000 Calibrated Magnification 53191 Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.3 IMAGE ACQUISITION Leginon CTF CORRECTION cryoSPARC 4.3 MODEL FITTING Coot 0.8.9.1 INITIAL EULER ASSIGNMENT cryoSPARC 4.3 FINAL EULER ASSIGNMENT cryoSPARC 4.3 CLASSIFICATION cryoSPARC 4.3 RECONSTRUCTION cryoSPARC 4.3 MODEL REFINEMENT PHENIX 1.21_5207
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1924070