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RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 290 VAPOR DIFFUSION, temperature 290.00K
Crystal Properties Matthews coefficient Solvent content 2.27 45.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.87 α = 90 b = 40.39 β = 90 c = 66.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray DIFFRACTOMETER
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 8 5691
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION 1.9 5 3979 0.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation n_multtor_nbd 0.252 n_singtor_nbd 0.085 n_chiral_restr 0.07 n_plane_restr 0.04 n_hb_or_metal_coord 0.034 n_angle_d 0.026 n_bond_d 0.012 n_planar_d n_sugar_bond_it n_sugar_angle_it
RMS Deviations Key Refinement Restraint Deviation n_multtor_nbd 0.252 n_singtor_nbd 0.085 n_chiral_restr 0.07 n_plane_restr 0.04 n_hb_or_metal_coord 0.034 n_angle_d 0.026 n_bond_d 0.012 n_planar_d n_sugar_bond_it n_sugar_angle_it n_phos_bond_it n_phos_angle_it n_bond_angle_restr n_dihedral_angle_restr n_impr_tor n_sugar_bond_d n_sugar_bond_angle_d n_phos_bond_d n_phos_bond_angle_d n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 486 Solvent Atoms 63 Heterogen Atoms
Software Software Software Name Purpose NUCLSQ refinement