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HER2 S310F in complex with TL1 Fab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7MN6 in silico model SwissModel
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.829 f_angle_d 0.648 f_chiral_restr 0.046 f_plane_restr 0.005 f_bond_d 0.003
Sample HER2 S310F in complex with TL1 Fab
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Vitrification carried out with blot force 5, blot time 4 s
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 161060 Reported Resolution (Å) 2.61 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7MN6) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 57.43
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 900 Maximum Defocus (nm) 2400 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Warp 1.0.9 PARTICLE SELECTION Topaz 0.2.5 IMAGE ACQUISITION Leginon 3.6 CTF CORRECTION cryoSPARC 4.2.1 MODEL FITTING UCSF ChimeraX 1.6.1 MODEL FITTING Coot 0.9.8.1 MODEL REFINEMENT PHENIX 1.20.1_4487 MODEL REFINEMENT Coot 0.9.8.1 RECONSTRUCTION cryoSPARC 4.2.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION